Project highlights
- High throughput lipidomics analysis
- Effects of future ocean conditions on cyanobacteria
- Lipid functioning in environmentally highly important phototrophic organisms
Overview
Due to anthropogenic activities the world’s oceans are changing dramatically. Increased atmospheric carbon dioxide (CO2) concentrations are partly absorbed in the oceans affecting several biogeochemical processes and contributing to ocean acidification (Caldeira and Wicket, 2003; Heinze et al., 2015). Additionally, human-induced climate change triggered changing nutrient distributions, a sea surface temperature (SST) increase and higher radiation in the photic zone constituting a challenge for marine life particularly phytoplankton. Yet effects of these multiple stressors on their physiology are limited.
Cells possess lipid membranes as a barrier towards such ever changing environments. In phototrophs, they further act as a key component of the thylakoid membrane embedding the photosynthetic machinery and hence are critical for photosynthesis. However, lipid membranes undergo changes due to prevailing environmental conditions like the external nutrient concentration. For example, if phosphorus (P), an essential macronutrient, is limited, P-free lipids replace phospholipids to provide P for other cellular functions (Van Mooy et al., 2009). Oceanic regions, typically characterised by low nutrient concentrations with P in the low nanomolar range such as the large central gyre systems, are expanding (Polovina et al. 2008). Yet, these nutrient poor and challenging environments are dominated by the cyanobacterial genera Synechococcus and Prochlorococcus, one of the main global primary producers fixing 25% of atmospheric CO2. Due to global warming their contribution is even expected to increase by a further 15-30% (Visintini et al., 2021).
Previous work in our group showed that lipid remodelling induced by P limitation affects carbon fixation in several Synechococcus spp. (Mausz et al. in prep., Figure 1). Nevertheless, how these environmentally important cyanobacteria will cope with changes in their lipid membrane while additionally facing multi-stressor conditions in a future ocean, remains yet to be resolved.
This project has two major aims: First it wants to establish the ecophysiological consequences of P-limitation induced lipid remodelling in cyanobacteria in combination with future ocean conditions such as increased sea surface temperature, high irradiance and ocean acidification. Second, it wants to explore the function of major membrane lipids in cyanobacteria, which undergo lipid remodelling, sulfoquinovosyl diacylglycerol (SQDG) and phosphatidylglycerol (PG).
Figure 1: Scheme of a cyanobacterial cell with its lipid membranes. (a) Overview of a cyanobacterial cell and (b) its lipid membranes with the different protein complexes embedded in the cytoplasmic membrane and thylakoid membrane. (c) Transmission electron image of Synechococcus sp. PCC 7002 showing membranes of thylakoid stacks. Scale bar equals 500 nm. Abbreviations: RubisCO, ribulose-1,5-bisphosphate carboxylase/oxygenase; PC, plastocyanin; PQ, plastoquinone; PSI and PSII, photosystem I and II.
Host
University of WarwickTheme
- Climate and Environmental Sustainability
- Organisms and Ecosystems
Supervisors
Project investigator
- Michaela Mausz (University of Warwick, [email protected])
Co-investigators
- Richard Puxty (University of Warwick, [email protected])
How to apply
- Each host has a slightly different application process.
Find out how to apply for this studentship. - All applications must include the CENTA application form. Choose your application route
Methodology
This project is focused on cultivation of the model cyanobacterium Synechococcus sp. PCC 7002 under varying future ocean conditions (i.e., P limitation, high CO2 concentration, increased temperature and irradiance). A wild type and lipid synthesis knockout mutant pair is available and other mutants will be designed as suitable. Additionally, several other marine cyanobacteria are available in our laboratories at Warwick.
Membrane lipid analysis requires quantification by liquid chromatography-mass spectrometry (LC-MS) using in-house instrumentation. Photophysiology will be studied by rapid light curve measurements using a Phyto-PAM Phytoplankton Analyzer, radioisotope assays to access CO2 fixation, and a Joliot type spectrophotometer, which allows to directly target the performance of photosystem I and II. Nutrients uptake kinetics (methylammonium, phosphate, sulphate) will be analysed by radioisotope assays. To study protein expression in-house mass spectrometry facilities at Warwick will be used. Morphological changes will be assessed by imaging flow cytometry and various microscopy techniques accessible from Warwick Research Technology Platforms (RTP).
Training and skills
DRs will be awarded CENTA Training Credits (CTCs) for participation in CENTA-provided and ‘free choice’ external training. One CTC can be earned per 3 hours training, and DRs must accrue 100 CTCs across the three and a half years of their PhD.
Training is available in the supervisor’s and co-supervisors’ labs with a special focus on different cultivation approaches for cyanobacteria including the usage of a Qubit Gas Control System for cultivation under high CO2. Training in other microbiological techniques (e.g. cloning, flow cytometry), lipid and protein extraction, lipidomics and proteomics analyses, bioinformatics tools, and radioisotope assays are also available. Special importance further has training in the conduction of photophysiology measurements using the Phyto-PAM and JTS-150 as well as interpretation and analysis of obtained data. Training in imaging techniques and imaging flow cytometry is available via staff at the Warwick RTPs.
Partners and collaboration
This project does not have any external partners, but students will have the opportunity to collaborate with colleagues from the supervisors’ established networks.
Further details
Informal enquiries can be directed to Dr Michaela Mausz ([email protected]).
To apply to this project:
- You must include a CENTA studentship application form, downloadable from: CENTA Studentship Application Form 2025.
- You must include a CV with the names of at least two referees (preferably three) who can comment on your academic abilities.
- Please submit your application and complete the host institution application process via: https://warwick.ac.uk/fac/sci/lifesci/study/pgr/studentships/nerccenta/ University of Warwick projects will be added here: https://warwick.ac.uk/fac/sci/lifesci/study/pgr/studentships/nerccenta/studentships/ and application guidance is at the bottom of this page. Complete the online application form – selecting course code P-C1PB (Life Sciences PhD); from here you will be taken through to another screen where you can select your desired project. Please enter “NERC studentship” in the Finance section and add Nikki Glover, [email protected] as the scholarship contact. Please also complete the CENTA Studentship Application Form 2025 and submit via email to [email protected]. Please quote CENTA 2025-W13 when completing the application form.
Applications must be submitted by 23:59 GMT on Wednesday 8th January 2025.
Possible timeline
Year 1
Characterise effects (photophysiology, morphology, proteomics) of lipid remodelling and future ocean conditions (e.g. high irradiance, increased temperature) on the ecophysiology of cyanobacteria.
Year 2
Further photophysiological analyses, and nutrient uptake assays under future ocean cultivation conditions and creation of mutants (e.g. phospholipid biosynthesis) to study the function of specific lipids.
Year 3
Synechococcus spp. lipid remodelling in a high CO2 world.
Further reading
Caldeira K, Wicket ME (2003) Anthropogenic carbon and ocean pH. Nature 425: 365.
Heinze C, Meyer S, Goris N, Anderson L, Steinfeldt R, Chang N, Le Quéré C, Bakker DCE (2015) The ocean carbon sink – impacts, vulnerabilities and challenges. Earth Syst. Dynam. 6: 327-358.
Polovina JJ, Howell EA, Abecassis M (2008) Ocean’s least productive waters are expanding. Geophys. Res. Lett. 35: L03618, https://doi.org/10.1029/2007GL031745.
Van Mooy BAS, Fredricks HF, Pedler BE, Dyhrman ST, Karl DM, Koblížek M, Lomas MW, Mincer TJ, Moore LR, Moutin T, Rappé MS, Webb EA (2009) Phytoplankton in the ocean use non-phosphorus lipids in response to phosphorus scarcity. Nature 458, 69-72.
Visintini N, Martiny AC, Flombaum P (2021) Prochlorococcus, Synechococcus, and picoeukaryotic phytoplankton abundnaces in the global ocean. Limnol. Oceanogr. Lett. 6: 207-215.