Project highlights

  • Establish the first Noble chafer genome record 
  • Establish the population structure of the Noble chafer in the Midlands 
  • Provide the evidence basis for conservation strategies of the Noble chafer 

Overview

The Three Counties (Herefordshire, Worcestershire and Gloucestershire) have a long history of, and are nationally significant for, traditional orchards and key species that utilize the orchard wood rot habitat. In particular the Three Counties traditional orchards are a stronghold for the rare Noble chafer (Gnorimus nobilis), a large, saproxylic, metallic-green beetle. Other small outlier populations occur across the South East.  While in Europe, Noble chafer is associated with veteran oak, beech and willow, in the UK, Noble chafer larvae eat the decaying wood of fruit trees, with the exception of a remnant New Forest population which is found in oak.  

The reason for this difference in the habit of UK and European Noble chafer is not known, however, traditional orchard acts like an accelerated mini wood pasture habitat, as fruit trees veteranize more rapidly that longer lived species such as oak or beech, producing rot habitat over 50-80 years rather than hundreds. Noble chafer may have made that jump to fruit trees during the mass expansion of orchards in the 19th century which coincided with the felling of large timber trees for shipbuilding during the Napoleonic wars.  

Due to post WWII losses of traditional orchard habitat,  Noble chafer is classed as “vulnerable” in the UK and is on the list of priority habitats and species in England (‘Section 41 habitats and species’). The beetle is large and unlikely to fly very far, estimates are between 200 and 700m based on similar species and a single observation of a beetle on flowers 700m from the nearest orchard. The remaining populations appear to be fragmented and isolated, though the degree to which they are isolated is unknown and is a crucial piece of missing information to inform the conservation of the species.  

This project will focus on:  

  • Generation of a Noble chafer genome sequence 
  • A study of the population demographics and isolation of Noble chafer in the three counties using genetic analysis from frass.  How isolated are they, how long have they been isolated for and how long can they survive as these isolated populations before local extinction occurs?  

A map showing Noble chafer occurrence across the three counties.

Figure 1: Noble chafer occurrence across the three counties (data 2000- 2010).

Host

University of Warwick

Theme

  • Organisms and Ecosystems

Supervisors

Project investigator

Co-investigators

How to apply

Methodology

A Next Generation Sequencing strategy will be used to build the first Noble chaffer genome from samples supplied by Gloucestershire Wildlife Trust (first year). The genome will be used to design genetic markers which will be used to identify the population structure of chafer populations non-destructively from their frass collected from Orchards across the Midlands.  

Training and skills

DRs will be awarded CENTA Training Credits (CTCs) for participation in CENTA-provided and ‘free choice’ external training. One CTC can be earned per 3 hours training, and DRs must accrue 100 CTCs across the three and a half years of their PhD.  

The student will learn genomic laboratory and bioinformatic techniques including basic coding skills which are highly sought in the biosciences. The student will also develop skills in population genetics.

Further details

For any enquiries related to this project please contact Professor Robin G Allaby, University of Warwick, [email protected]. 

To apply to this project: 

  • You must include a CV with the names of at least two referees (preferably three) who can comment on your academic abilities.  

Applications must be submitted by 23:59 GMT on Wednesday 8th January 2025.

Possible timeline

Year 1

Generation of a de novo genome of Gnorimus nobilis using Next Generation Sequencing technology, most likely on the Illumina NovaSeq platform (short read), although long read technology (PacBio) may be applied 

Year 2

Interrogation of the genome to establish suitable genetic markers to build a metabarcode type assay (enhanced for diversity rather than just species identification). This will be applied to environmental DNA samples from frass produced by the Noble chaffer across a large number of samples across the three counties. 

Year 3

Population genetic analysis of genetic diversity data, including the characterization of the extent of population structure, and parameters associated with isolation in order to answer questions about the long term mobility of the organism. 

Further reading

Journal:  

Schenke, J., (2012) ‘The autecology of the Noble Chafer Gnorimus nobilis within Worcestershire’, Worcestershire Record, 32, pp. 33-39. Available at: https://www.wbrc.org.uk/WORCRECD/32/Schenke_Jenni–The_autecology_of_the_Nob.html  

Bunney, A., (2012) ‘Investigating the habitat parameters of the Noble Chafer Beetle Gnorimus nobilis in the Wyre Forest area’, 32, pp. 40-47. Available at: https://www.wbrc.org.uk/WORCRECD/32/Bunney_Anna–Investigating_the_habitat_p.html  

Blake, M., McKeown, N.J., and Shaw, P., (2014) ‘DNA isolation from single pieces of beetle frass: a resource for conservation genetic studies of Gnorimus nobilis’, Conservation ecology of European saproxylic insects 

JNCC (2008) UK Biodiversity Action Plan Priority Habitat Descriptions: Traditional Orchards. Available at: https://data.jncc.gov.uk/data/2829ce47-1ca5-41e7-bc1a-871c1cc0b3ae/UKBAP-BAPHabitats-56-TraditionalOrchards.pdf  

PTES (2024) Noble chafer beetle facts. Available at: https://ptes.org/campaigns/noble-chafer-beetles/noble-chafer-beetles-facts/