Project highlights
- Multidisciplinary approach, of ecologist and species specialists with engineering teams towards common ecological monitoring goals.
- Unique opportunity to work closely with an independently funded field site with a wide range of UK rural micro-habitats.
- Integration of multiple existing ecological survey projects at a single site to allow co-development of tools and methods for dissemination, initially to the National Forest Company, the Forestry Commission, the Leicestershire and Rutland Wildlife Trust, Leicestershire Biodiversity Groups and then onto to the wider community.
Overview
The evaluation and collection of data for physical, biological and anthropogenic factors that may affect a wide range of taxa in UK environments is of increasing importance for understanding behavioural, community and conservational ecology of these groups and their complex interactions under a range of stimuli from agricultural practice, urbanisation, climate change effects, etc. To do this efficiently the development and use of new, and the integrations of existing technologies for environmental applications offers exciting possibilities for improved efficiencies and quality for the collection of ecological data. For example, the assessment of the health of the UK’s insect populations is a key national research target. Multi-spectral optical / infrared techniques combined with Artificial Intelligence / Machine learning (AI/ML) methodologies in an Internet-of-Things (IoT) sensor framework offers opportunities to augment current assessment practices to higher levels of coverage, detail and data quality. It is proposed to undertake multi-disciplinary research to develop and evaluate new optical and acoustic technologies and methods to automate long-term data collection of ecological relevant metrics associated insect populations and behaviours in a variety of micro-habitats at an established rural field site. This site would be used to evaluate the developed technologies and methods over seasonal and insect species life cycle variations, population variations, habitat use, predator-prey interactions etc. and to use this test site as a launch pad to wider dissemination of these methods to larger (national) deployments once established. The research will review and evaluate the use of these technologies and methodologies integrated with for example traditional insect survey techniques such as physical sample methodologies and genetic analysis (acting as ground truthing data) as well as the long-term monitoring of natural and bioacoustics acoustic environments and species specific ‘sound scapes’. These integrated methods offer a wider viewpoint through assessment of birds and bat species and potentially mammal’s behaviours and their co-habitat use as well as potential insights into interactions with insects. This will be integrated with other environmental factors such as meteorology, air quality and anthropogenic interactions such as woodland management, agriculture practice, anthropogenic noise etc. from a holistic environment viewpoint.
Figure 1: Iterative design concept of a multi-sensor integrated system development for assessment of insect species ‘health’ using multi-sensor technologies and machine learning.
Host
Loughborough UniversityTheme
- Climate and Environmental Sustainability
- Organisms and Ecosystems
Supervisors
Project investigator
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Prof. Paul Lepper ([email protected]) Loughborough University
Co-investigators
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Dr Claire Guo ([email protected]) Loughborough University
How to apply
- Each host has a slightly different application process.
Find out how to apply for this studentship. - All applications must include the CENTA application form. Choose your application route
Methodology
It is proposed to work collaboratively with an existing and sustainable 33-acre bio diverse privately owned and funded field site, supported by the National Forest Company, the Forestry Commission, the Woodland Trust and Leicestershire County Council. The site is located in Leicestershire adjacent to an SSSI National Nature Reserve, Bradgate Park and is known as the ‘Kettle’ project allowing access to a wildlife corridor, a variety of bio–diverse habitats including ancient woodland, managed forestry, wild flower meadow, designated parkland, grazing land, an arboretum, a bird feeding and conservation area and several differing freshwater pond environments. Long-term broad-spectrum bio-acoustic monitoring of various habitats has been in place since 2024. Its proposed to integrate this data collection exercise with both bird and bat visual surveys also taking place including insect survey projects such as BIOSCAN (https://www.sanger.ac.uk/collaboration/bioscan/) started in 2024. This site and data will be used to co-develop and test the use of optical and acoustic sensor technologies / methodologies developed by the engineering school at Loughborough University in collaboration with a wide range of ecology and management specialist stake holders. Technologies used will include optical / infrared image AI development for insect and other species counts, multi sensor systems – optical, temperature, metrological, acoustic etc., and include the use of technologies such as UAV’s.
Training and skills
DRs will be awarded CENTA Training Credits (CTCs) for participation in CENTA-provided and ‘free choice’ external training. One CTC can be earned per 3 hours training, and DRs must accrue 100 CTCs across the three and a half years of their PhD.
DR training will be provided in subject specialist areas, including: in acoustic data analysis, signal processing, machine learning / artificial intelligence, embedded system development, and data collection and data analysis.
Further details
For further information on the PhD project please contact Prof. Paul Lepper at Loughborough University ([email protected]) https://www.lboro.ac.uk/schools/meme/staff/paul-lepper/.
To apply to this project:
- You must include a CENTA studentship application form, downloadable from: CENTA Studentship Application Form 2025.
- You must include a CV with the names of at least two referees (preferably three) who can comment on your academic abilities.
- Please submit your application and complete the host institution application process via: https://www.lboro.ac.uk/study/postgraduate/apply/research-applications/ The CENTA Studentship Application Form 2025 and CV, along with other supporting documents required by Loughborough University, can be uploaded at Section 10 “Supporting Documents” of the online portal. Under Section 4 “Programme Selection” the proposed study centre is Central England NERC Training Alliance. Please quote CENTA 2025-LU6 when completing the application form.
- For further enquiries about the application process, please contact the School of Social Sciences & Humanities ([email protected]).
Applications must be submitted by 23:59 GMT on Wednesday 8th January 2025.
Possible timeline
Year 1
Review of ongoing BIOSCAN insect survey data and acoustic data collections data, methodologies and data formats. Design and conduct initial image capture field work at the Kettle field site, initial image algorithms development. Development of data and meta data integration plan across various survey methodologies. Initial stake holder engagement.
Year 2
Continued data collection and algorithm developments across a series of iterative shorter term (1 month) field trials at the kettle field site. Establishment of data management protocols for survey and meta data integration across the various surveys. Data analysis and dissemination in both public and peer reviewed scientific. Establish data sharing protocols.
Year 3
Longer term (6-12 months) testing at the field side, including scaling to multiple sensors and communication and data collection protocols under an Internet-of-Things methodology. Implement open access data sharing methodologies. Implementation of upscaling of methodologies to wider stake holder communities. Thesis preparation.
Further reading
Sanger (No date) ‘BIOSCAN’. Available at: https://www.sanger.ac.uk/collaboration/bioscan/ (Accessed: 21 September 2024).
Teixeira. A.C., Morais, R., Sousa, J. J., Peres, E., Cunha,A. (2023) ‘Using deep learning for automatic detection of insects in traps’. Procedia Computer Science, Volume 219, pp. 153-160, ISSN 1877-0509, https://doi.org/10.1016/j.procs.2023.01.276.
Pijanowski, B. C. (2016) ‘Terrestrial Soundscapes: Status of Ecological Research in Natural and Human-Dominated Landscapes’, Adv Exp Med Biol., pp. 839-846. doi: 10.1007/978-1-4939-2981-8_103. PMID: 26611040.